If you are on Windows and need to connect via SSH to your server, there is a very easy to use program called PuTTY.
Difficulty level: Super Easy
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If you are not on a shared hosting package, you may not know the paths of certain binaries, apps, etc, such as Ffmpeg, PHP, FlvTool2, etc. In this article, I will tell you a way of knowing your binaries paths. You must have SSH access to your Linux (not Windows) server. You do not need root access.
Difficulty level: Medium (Easy if you have basic Linux terminal knowledge).
NOTE: In this tutorial, I will not cover how to establish a SSH connection (that is coming soon!)
If you are looking for a simple and free control panel for your VPS or Dedicated, I got something for you! It is Webmin control panel, a very easy control panel to use, and best of all, it is really simple to install. You will need SSH root access. Tested on CentOS 5 & 6, and RedHat.
Difficulty level: Easy